public class FastaParser
extends java.lang.Object
Modifier and Type | Field and Description |
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static java.util.regex.Pattern |
FASTA_DESC_LINE |
Constructor and Description |
---|
FastaParser() |
Modifier and Type | Method and Description |
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static boolean |
isLikelyFasta(java.io.InputStream is) |
static void |
main(java.lang.String[] args) |
static java.util.List<Sequence> |
parse(java.io.File f) |
static java.util.List<Sequence> |
parse(java.io.InputStream is) |
static Msa |
parseMsa(byte[] bytes) |
static Msa |
parseMsa(java.io.File f) |
static Msa |
parseMsa(java.io.InputStream is) |
static Msa |
parseMsa(java.lang.String s) |
public static void main(java.lang.String[] args)
public static boolean isLikelyFasta(java.io.InputStream is) throws java.io.IOException
java.io.IOException
public static Msa parseMsa(java.io.File f) throws java.io.IOException
java.io.IOException
public static Msa parseMsa(java.io.InputStream is) throws java.io.IOException
java.io.IOException
public static Msa parseMsa(java.lang.String s) throws java.io.IOException
java.io.IOException
public static Msa parseMsa(byte[] bytes) throws java.io.IOException
java.io.IOException
public static java.util.List<Sequence> parse(java.io.File f) throws java.io.IOException
java.io.IOException
public static java.util.List<Sequence> parse(java.io.InputStream is) throws java.io.IOException
java.io.IOException