public interface GenomeWideCombinableDomains
Modifier and Type | Interface and Description |
---|---|
static class |
GenomeWideCombinableDomains.GenomeWideCombinableDomainsSortOrder |
Modifier and Type | Method and Description |
---|---|
boolean |
contains(DomainId key_id) |
CombinableDomains |
get(DomainId key_id) |
java.util.SortedMap<DomainId,CombinableDomains> |
getAllCombinableDomainsIds() |
java.util.SortedSet<DomainId> |
getAllDomainIds()
This should return all domains ids present in the genome.
|
BinaryDomainCombination.DomainCombinationType |
getDomainCombinationType() |
java.util.SortedSet<DomainId> |
getMostPromiscuosDomain() |
DescriptiveStatistics |
getPerGenomeDomainPromiscuityStatistics()
This should return a statistic for per domain
promiscuity in a genome.
|
int |
getSize() |
Species |
getSpecies() |
java.util.SortedSet<BinaryDomainCombination> |
toBinaryDomainCombinations()
This should return all binary domain combinations present in the genome.
|
java.lang.StringBuilder |
toStringBuilder(GenomeWideCombinableDomains.GenomeWideCombinableDomainsSortOrder order) |
boolean contains(DomainId key_id)
CombinableDomains get(DomainId key_id)
java.util.SortedMap<DomainId,CombinableDomains> getAllCombinableDomainsIds()
java.util.SortedSet<DomainId> getAllDomainIds()
BinaryDomainCombination.DomainCombinationType getDomainCombinationType()
java.util.SortedSet<DomainId> getMostPromiscuosDomain()
DescriptiveStatistics getPerGenomeDomainPromiscuityStatistics()
int getSize()
Species getSpecies()
java.util.SortedSet<BinaryDomainCombination> toBinaryDomainCombinations()
java.lang.StringBuilder toStringBuilder(GenomeWideCombinableDomains.GenomeWideCombinableDomainsSortOrder order)